Summary list of services currently or planned to be added to NDS Labs Workbench.
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Name | Description | In Labs Workbench? | Notes |
---|---|---|---|
browndog | Data transformation service, http://browndog.ncsa.illinois.edu/ | ||
ckan | Data portal, http://ckan.org/ | ||
clowder | Data hosting/sharing, https://clowder.ncsa.illinois.edu/ | ||
dataone | Repository, https://www.dataone.org/ | ||
dataverse | Repository, http://dataverse.org/ | ||
dspace | Repository, http://www.dspace.org/ | ||
fedora | Repository, http://fedorarepository.org/ | ||
girder | Data hosting/sharing, http://girder.readthedocs.org/en/latest/index.html | ||
globus | Data transfer/publishing, https://www.globus.org/ | ||
hubzero | Tool sharing, https://hubzero.org/ | ||
invenio | Digital library (basis for zenodo), https://github.com/inveniosoftware/invenio | ||
irods | Federated Archive, http://irods.org/ | ||
omeka | Repository, https://omeka.org/ | ||
scidrive | Data hosting/sharing, http://scidrive.org/ | ||
zenodo | Data & software publication, http://zenodo.org/ |
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Ontology and Vocabulary Management
Name | Description | In Labs Workbench? | Notes |
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bioportal | Ontology management, http://bioportal.bioontology.org/ | ||
ecgs | Geosemantic server, ecgs.ncsa.illinois.edu | ||
iqvoc | Vocabulary management, http://iqvoc.net/ | ||
mmiorr | Ontology repository, http://mmisw.org/orr/ | ||
ontowiki | Semantic wiki, http://aksw.org/Projects/OntoWiki.html | ||
skosmos | Vocabulary management, https://github.com/NatLibFi/Skosmos | ||
tematres | Vocabulary management, http://www.vocabularyserver.com/ | ||
webprotege | Ontology editor, http://protege.stanford.edu/ |
Software Development Environments
Name | Description | In Labs Workbench? | Notes |
---|---|---|---|
cloud9 | https://github.com/c9 | ||
eclipse | https://eclipse.org/ | ||
eclipse che | http://www.eclipse.org/che/ | ||
idea | https://www.jetbrains.com/idea/ | ||
pycharms | https://www.jetbrains.com/pycharm/ | ||
vscode | https://code.visualstudio.com/ |
Workflow management
Name | Description | In Labs Workbench? | Notes |
---|---|---|---|
pegasus | Workflow management, https://pegasus.isi.edu/ |
General Services
Name | Description | In Labs Workbench? | Notes |
---|---|---|---|
agraph | Graph store, http://franz.com/agraph/allegrograph/ | ||
apache | Web server, https://httpd.apache.org/ | ||
elasticsearch | Text indexing, https://www.elastic.co/cloud/signup | ||
gitlab | Source code management, https://about.gitlab.com/ | ||
glassfish | Java application server, https://glassfish.java.net/ | ||
jena | Triple store, https://jena.apache.org/index.html | ||
kallithea | Source code management, https://kallithea-scm.org/ | ||
mediagoblin | Media publishing, http://mediagoblin.org/ | ||
mediawiki | Wiki, https://www.mediawiki.org/wiki/MediaWiki | ||
moinmoin | Wiki, https://moinmo.in/ | ||
mongodb | NoSQL database, https://www.mongodb.org/ | ||
mysql | Database, https://www.mysql.com/ | ||
nginx | Web server, http://nginx.org/en/ | ||
owncloud | Cloud storage, https://owncloud.org/ | ||
postgres | Database, http://www.postgresql.org/ | ||
rabbitmq | Distributed messaging bus, http://www.rabbitmq.com/ | ||
rdf4j | Triple store, http://rdf4j.org/ | ||
solr | Search, http://lucene.apache.org/solr/ | ||
xwiki | Wiki, http://www.xwiki.org/xwiki/bin/view/Main/WebHome |
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