NDS Labs Services

Summary list of services currently or planned to be added to the NDS Labs Workbench.

Research Data Management Tools

Name	Description	In Labs Workbench?	Notes
browndog	Data transformation service, http://browndog.ncsa.illinois.edu/
ckan	Data portal, http://ckan.org/
clowder	Data hosting/sharing, https://clowder.ncsa.illinois.edu/
dataone	Repository, https://www.dataone.org/
dataverse	Repository, http://dataverse.org/
dspace	Repository, http://www.dspace.org/
fedora	Repository, http://fedorarepository.org/
girder	Data hosting/sharing, http://girder.readthedocs.org/en/latest/index.html
globus	Data transfer/publishing, https://www.globus.org/
hubzero	Tool sharing, https://hubzero.org/
invenio	Digital library (basis for zenodo), https://github.com/inveniosoftware/invenio
irods	Federated Archive, http://irods.org/
omeka	Repository, https://omeka.org/
ownCloud	File sharing, http://www.owncloud.org
scidrive	Data hosting/sharing, http://scidrive.org/
sufia	Repository, http://sufia.io
zenodo	Data & software publication, http://zenodo.org/

Name	Description	In Labs Workbench?	Notes
cyverse	Data storage/analysis, http://www.iplantcollaborative.org/
galaxy	Data intensive research platform, https://galaxyproject.org/
h2o	Electronic notebook for AI
jupyter	Electronic notebook, http://jupyter.org/
rstudio	IDE for R, https://www.rstudio.com/
tworavens	Statistical tools, http://datascience.iq.harvard.edu/about-tworavens
weka	Machine learning, http://www.cs.waikato.ac.nz/ml/weka/
yt	Data visualization, http://yt-project.org/

webprotege

Name	Description	In Labs Workbench?	Notes
bioportal	Ontology management, http://bioportal.bioontology.org/
ecgs	Geosemantic server, ecgs.ncsa.illinois.edu
iqvoc	Vocabulary management, http://iqvoc.net/
mmiorr	Ontology repository, http://mmisw.org/orr/
ontowiki	Semantic wiki, http://aksw.org/Projects/OntoWiki.html
skosmos	Vocabulary management, https://github.com/NatLibFi/Skosmos
tematres	Vocabulary management, http://www.vocabularyserver.com/
	Ontology editor, http://protege.stanford.edu/

Name	Description	In Labs Workbench?	Notes
cloud9	https://github.com/c9
eclipse	https://eclipse.org/
eclipse che	http://www.eclipse.org/che/
idea	https://www.jetbrains.com/idea/
jenkins	Continuous integration, https://jenkins.io/
pycharm	https://www.jetbrains.com/pycharm/
vscode	https://code.visualstudio.com/

Name	Description	In Labs Workbench?	Notes
pegasus	Workflow management, https://pegasus.isi.edu/

Name	Description	In Labs Workbench?	Notes
agraph	Graph store, http://franz.com/agraph/allegrograph/
apache	Web server, https://httpd.apache.org/
cloudcommander	File manager, http://cloudcmd.io/
docker	Docker, http://www.docker.com
elasticsearch	Text indexing, https://www.elastic.co/cloud/signup
gitlab	Source code management, https://about.gitlab.com/
glassfish	Java application server, https://glassfish.java.net/
jena	Triple store, https://jena.apache.org/index.html
kallithea	Source code management, https://kallithea-scm.org/
kibana
logstash
mediagoblin	Media publishing, http://mediagoblin.org/
mediawiki	Wiki, https://www.mediawiki.org/wiki/MediaWiki
moinmoin	Wiki, https://moinmo.in/
mongodb	NoSQL database, https://www.mongodb.org/
mysql	Database, https://www.mysql.com/
nginx	Web server, http://nginx.org/en/
owncloud	Cloud storage, https://owncloud.org/
postgres	Database, http://www.postgresql.org/
rabbitmq	Distributed messaging bus, http://www.rabbitmq.com/
redis	Data structure store and message broker, http://redis.io
rdf4j	Triple store, http://rdf4j.org/
solr	Search, http://lucene.apache.org/solr/
xwiki	Wiki, http://www.xwiki.org/xwiki/bin/view/Main/WebHome

Previous version can be found here.